home > bioproject > PRJDB4033
identifier PRJDB4033
type bioproject
sameAs
organism Streptococcus pyogenes
title Comparative genome sequencing of three Streptococcus pyogenes strains 10-85, 11-171, and 11O-2
description Streptococcus pyogenes, is a Gram-positive bacterium that infects the upper respiratory tract, including the tonsils and pharynx, and is responsible for post-infection diseases such as rheumatic fever and glomerulonephritis. S. pyogenes also causes severe invasive diseases including necrotizing fasciitis and streptococcal toxic shock syndrome (STSS).Recently, we reported that a region encoding the SalR-SalK two component regulatory system and the adjacent type I restriction modification system was deleted in some emm 1 type isolates (APMIS, Volume 122, Issue 10, pages 914-921, DOI: 10.1111/apm.12230). The isolates with the deletion were detected only in the emm 1 strains that were isolated after 2010, but not before 2010. we named the emm 1 strains with the deletion as a "novel-type" emm 1 strain. In a experiment using mouse invasive infection model, both of two novel emm 1 type strains (10-85 and 11-171) isolated from "STSS" patients were more virulent than a novel emm 1 type strain (11O-2) isolated from a "non-STSS" patient. In the present project, we performed whole genome sequences of strains 10-85, 11-171, and 11O-2, and searched them for some specific mutations or single nucleotide polymorphisms (SNPs) existing in only low-virulent strain 11O-2, but not strains 10-85 and 11-171.
data type Genome Sequencing
publication
properties 
{...}
dbXrefs
sra-run  DRR039933DRR039934DRR039935DRR178237
sra-submission  DRA003737DRA008374
biosample  SAMD00034931SAMD00034932SAMD00034933
sra-study  DRP002826
sra-sample  DRS021991DRS021992DRS021993
sra-experiment  DRX036161DRX036162DRX036163DRX168763
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status public
visibility unrestricted-access
dateCreated 2015-06-26T08:46:27+09:00
dateModified 2015-11-30T13:01:46+09:00
datePublished 2015-11-30T13:01:46+09:00