home > bioproject > PRJDB4081
identifier PRJDB4081
type bioproject
sameAs
organism Homo sapiens
title smRNA-seq analysis of RPTEC under hypoxic condition with Dznep.
description Hypoxia plays important roles in progression of chronic kidney diseases. HIF1 (hypoxia inducible factor 1) is a master transcriptional factor under hypoxic condition. To clarify the molecular mechanisms of HIF1 and identify novel small RNAs under hypoxia, we performed RNA-seq using human renal proximal tubular epithelial cells (RPTEC). In addition, we use Dznep which is an inhibitor of H3K27me3 to examine the relationship between HIF1 and epigenetic modifiers under hypoxia.
data type Transcriptome or Gene Expression
publication
properties 
{...}
dbXrefs
sra-run  DRR040691DRR040692DRR040693DRR040694DRR040695DRR040696
sra-submission  DRA003789
biosample  SAMD00035541SAMD00035542SAMD00035543SAMD00035544SAMD00035545SAMD00035546
sra-study  DRP004441
sra-sample  DRS075086DRS075087DRS075088DRS075089DRS075090DRS075091
sra-experiment  DRX036629DRX036630DRX036631DRX036632DRX036633DRX036634
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2015-07-23T07:32:24+09:00
dateModified 2018-09-01T13:03:57+09:00
datePublished 2018-09-01T13:03:57+09:00