home > bioproject > PRJDB4226
identifier PRJDB4226
type bioproject
sameAs
organism soil metagenome
title Effect of land-use change from paddy field on soil bacterial community in the hilly and mountainous area
description Most of the terraced rice-fields in the hilly and mountainous area at Nuta, Otoyo in Kochi, Japan, were abandoned or have been changed to citron fields, forest lands, and bamboo thickets. Soil bacterial community structures of these different land usages were analyzed using 16S rRNA partial gene sequences. DGGE band patters of each soil were quite similar, although several paddy-field specific DNA bands were observed. Based on pyrosequencing data, bacterial species richness was slightly higher in paddy fields than in other soils. While overall bacterial community structures of soils at different land usages were similar, beta-diversity analysis clearly indicated that there are three clusters. Detail bacterial community structure of paddy fields was different from those of non-paddy field land usages. Interestingly, community structure of crop fields, which have not been used as paddy field, was different from those of at least one-time paddy fields. This might reflect the history of land usage.
data type Metagenome
publication
properties 
{...}
dbXrefs
sra-run  DRR046767DRR046768DRR046769DRR046770DRR046771DRR046772DRR046773DRR046774DRR046775DRR046776 More
sra-submission  DRA004024DRA004025
biosample  SAMD00041177SAMD00041178SAMD00041179SAMD00041180SAMD00041181SAMD00041182SAMD00041183SAMD00041184SAMD00041185SAMD00041186 More
sra-study  DRP002755
sra-sample  DRS021068DRS021069DRS021070DRS021071DRS021072DRS021073DRS021074DRS021075DRS021076DRS021077 More
sra-experiment  DRX042055DRX042056DRX042057DRX042058DRX042059DRX042060DRX042061DRX042062DRX042063DRX042064 More
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status public
visibility unrestricted-access
dateCreated 2015-09-15T04:16:10+09:00
dateModified 2015-09-15T07:21:05+09:00
datePublished 2015-09-15T07:21:05+09:00