home > bioproject > PRJDB4270
identifier PRJDB4270
type bioproject
sameAs
organism Drosophila melanogaster
title Amplicon sequencing of melanin biosynthesis genes of Drosophila melanogaster
description In order to quantify cis-regulatory expression levels of melanin biosynthesis genes (ebony, tan, black, pale), parts of the genes were amplified from 1) cDNA from female head-less body of the F1 hybrid between Mel6 and each of the 20 DGRP (Drosophila melanogaster genetic reference panel, Mackay et al. 2012) strains, 2) genomic DNA from the F1 hybrid, and 3) cDNA from mixed RNA samples of the parental strains (Mel6 and each of the 20 DGRP strains). These amplicons were sequenced using Roche 454 GS junior sequencer and allele specific sequence reads were counted.
data type Targeted Locus (Loci)
publication
properties 
{...}
dbXrefs
sra-run  DRR047026DRR047027DRR047028DRR047029DRR047030DRR047031DRR047032DRR047033DRR047034DRR047035 More
sra-submission  DRA004064
sra-analysis  DRZ007412
biosample  SAMD00041693SAMD00041694SAMD00041695SAMD00041696SAMD00041697SAMD00041698SAMD00041699SAMD00041700SAMD00041701SAMD00041702 More
sra-study  DRP002791
sra-sample  DRS021505DRS021506DRS021507DRS021508DRS021509DRS021510DRS021511DRS021512DRS021513DRS021514 More
sra-experiment  DRX042314DRX042315DRX042316DRX042317DRX042318DRX042319DRX042320DRX042321DRX042322DRX042323 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2015-10-04T05:35:04+09:00
dateModified 2015-10-15T13:20:28+09:00
datePublished 2015-10-15T13:20:28+09:00