home > bioproject > PRJDB4334
identifier PRJDB4334
type bioproject
sameAs
organism Diospyros kaki
title Genetic to epigenetic switch in the flexible sex determination system of polyploid persimmon
description In this project, we exploited evidences for the establishment of an epigenetic switch regulating sex determination in polyploid persimmon. In diploid wild persimmons (Diospyros spp.), male flower development is based on the repression of MeGI by the Y-encoded male-determining factor OGI. On the other hand, in hexaploid Oriental persimmon (D. kaki), transient small-RNAs derived from MeGI and the resultant DNA methylation play a main role in sex-determination. This regulation leads to the formation of monoeocy phenotype, in genetically male individuals which carry the Y-chromosomes. OGI expression is undetectable in hexaploid persimmon, possibly due to the SINE-like insertion in the 5' region of its promoter. These situations suggest the adaptive evolution from dioecious sex determination to a flexible sex determination following polyploidization. Here, we give illumina reads data for small-RNAseq analysis in the annual cycles in both diploid D. lotus and hexaploid D. kaki, and for bisulfite PCR sequencing in plant organs in male and female flowers/individuals.
data type Epigenomics Targeted Locus (Loci) Transcriptome or Gene Expression
publication
27956470
grant
Grant-in-Aid for Young Scientists By Japan Society for the Promotion of Science
Grant-in-Aid for Challenging Exploratory Research By Japan Society for the Promotion of Science
properties 
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dbXrefs
sra-run  DRR048670DRR054087DRR054088DRR054089DRR054090DRR054091DRR054092DRR054093DRR054094DRR054095 More
sra-submission  DRA004150DRA004357DRA004452DRA005160
biosample  SAMD00042762SAMD00042779SAMD00046287SAMD00046288SAMD00046289SAMD00046290SAMD00046291SAMD00046292SAMD00046293SAMD00046294 More
sra-study  DRP003583
sra-sample  DRS042970DRS043017DRS043018DRS043019DRS043020DRS043021DRS043022DRS043023DRS043024DRS043025 More
sra-experiment  DRX043953DRX048941DRX048942DRX048943DRX048944DRX048945DRX048946DRX048947DRX048948DRX048949 More
distribution JSONJSON-LD
status public
visibility unrestricted-access
dateCreated 2015-11-03T05:31:12+0000
dateModified 2017-04-05T04:19:51+0000
datePublished 2017-04-05T04:19:51+0000