home > bioproject > PRJDB4617
identifier PRJDB4617
type bioproject
sameAs
organism Oryza sativa
title QTL-seq for heading date under short day conditions in Rice
description Heading date (flowering time) is one of the most important traits for the adaptation of rice to different environmental area. However, it is limited that genetic analyses have been performed under short day conditions. To find novel QTLs for heading date under short day (SD) conditions, we developed F2 population crossed between early heading cultivar, Nipponbare, and late heading line (BIL55) which derived from the back cross inbred lines crossed between Nipponbare and Kasalath. To conduct QTL-seq, bulked DNA samples from extreme early and extreme late heading were prepared. The extreme early bulk DNA was separated into two categories based on the order of heading date, and the extreme late one was separated into four categories. The parents and six F2 bulked sample were genome-widely re-sequenced.
data type Genome Sequencing Phenotype and Genotype
publication
properties 
{...}
dbXrefs
sra-run  DRR056223DRR056224DRR056225DRR056226DRR056227DRR056228DRR056229DRR056230
sra-submission  DRA004492
biosample  SAMD00047736SAMD00047737SAMD00047738SAMD00047739SAMD00047740SAMD00047741SAMD00047742SAMD00047743
sra-study  DRP003332
sra-sample  DRS034910DRS034911DRS034912DRS034913DRS034914DRS034915DRS034916DRS034917
sra-experiment  DRX050901DRX050902DRX050903DRX050904DRX050905DRX050906DRX050907DRX050908
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2016-02-25T01:58:00+09:00
dateModified 2016-11-14T13:20:25+09:00
datePublished 2016-11-14T13:20:25+09:00