home > bioproject > PRJDB5707
identifier PRJDB5707
type bioproject
sameAs
organism Anguilla japonica
title Whole-genome re-sequencing of the Japanese eels
description Japanese, European, and American eels are migratory, and catadromous migration fish share several common features in their life cycles. Panmixia of American and European eels has been demonstrated by several recent population genetic studies using extensive SNPs (single nucleotide polymorphisms) data. Here, we demonstrate that a Japanese eel group from the Kuma River differs from other panmictic Japanese eels, using a population genetic analysis based on 1000 GB of whole-genome sequence data from 84 eel individuals. Even after removal of the potential adapted/selected SNPs data, we obtained consistent results against panmixia. These results indicated non-panmixia of Japanese eels, unlike in the cases of American and European eels. Given the well-defined spawning area of the Japanese eel, the existence of this different group remains unclear. We propose combined processes, including subdivision of the spawning area, philopatry, and preference/avoidance of habitat, to explain the development of this non-panmictic group in the Japanese eel population. These observations may reflect initial stages of sympatric speciation of these eels.
data type Variation
publication
30274234
properties 
{...}
dbXrefs
sra-run  DRR091885DRR091886DRR091887DRR091888DRR091889DRR091890DRR091891DRR091892DRR091893DRR091894 More
sra-submission  DRA005772
biosample  SAMD00078764SAMD00078765SAMD00078766SAMD00078767SAMD00078768SAMD00078769SAMD00078770SAMD00078771SAMD00078772SAMD00078773 More
sra-study  DRP004691
sra-sample  DRS082843DRS082844DRS082845DRS082846DRS082847DRS082848DRS082849DRS082850DRS082851DRS082852 More
sra-experiment  DRX085455DRX085456DRX085457DRX085458DRX085459DRX085460DRX085461DRX085462DRX085463DRX085464 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2017-04-19T08:28:35+09:00
dateModified 2018-12-21T02:38:34+09:00
datePublished 2018-12-21T02:38:34+09:00