home > bioproject > PRJDB5801
identifier PRJDB5801
type bioproject
sameAs
organism Escherichia coli MC1061
title Relationship analysis between molecular mechanisms of persister formation and environmental stress
description When bacterial population is exposed to antibiotics, only small subpopulation could survive and cause the recurrence of infections. Surviving persisters are different from antibiotic resistant mutant, because their tolerances arise from phenotypic variants. This phenotypic heterogeneity provides population with advantageous properties to prevent the extinction. From previous research, mechanisms of persister formation are highly redundant and they are influenced by growth phase, stressed environment, and immune system. In order to investigate persister, we developed a marker for E.coli persisters, and identified novel gene expression which leads to switch into the persister phenotype. Although the gene knockdown decreased persister level at exponential phase in LB medium, it was not reproduced in stressed conditions. The objective of this project is to reveal relationships between stressed conditions and mechanisms of persister formation.
data type Transcriptome or Gene Expression
publication
29577369
properties 
{...}
dbXrefs
sra-run  DRR093105DRR093106DRR093107DRR093108DRR093109DRR093110DRR093111DRR093112DRR093113DRR093114 More
sra-submission  DRA005824
biosample  SAMD00080671SAMD00080672SAMD00080673SAMD00080674SAMD00080675SAMD00080676SAMD00080677SAMD00080678SAMD00080679SAMD00080680 More
sra-study  DRP004545
sra-sample  DRS077733DRS077734DRS077735DRS077736DRS077737DRS077738DRS077739DRS077740DRS077741DRS077742 More
sra-experiment  DRX086603DRX086604DRX086605DRX086606DRX086607DRX086608DRX086609DRX086610DRX086611DRX086612 More
distribution JSONJSON-LD
Download
ddbj_core_bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2017-05-23T04:38:02+09:00
dateModified 2018-10-25T13:17:35+09:00
datePublished 2018-10-25T13:17:35+09:00