home > bioproject > PRJDB5874
identifier PRJDB5874
type bioproject
sameAs
organism Gallus gallus
title Chick pallium RNA sequencing, studies on Pax6 function in chicken neurogenesis
description The neocortex is a distinctive feature of mammalian brains, and its evolutionary origin is still under debate. The tangential expansion and six-layered laminar structure of the mammalian neocortex have been attributed to the increased proliferative/neurogenic potential of radial glia and innovation of novel cell populations including Cajal-Retzius cells. These developmental programs are deeply regulated by a transcription factor Pax6 during neocortical development. However, whether or how these Pax6-dependent regulations vary between mammals and other species is unknown. The aim of this project is to examine Pax6-dependent neurogenic programs in non-mammalian amniotes and compare to that of mammals. In order to identify the Pax6 function in forebrain development of non-mammals, we transfected Pax6 expressing vector into developing chick pallium and extracted total RNA for RNA-sequencing analysis. There were significant changes in the expression of a number of genes compared to control samples, and these data imply deeply conserved neurogenic programs between mammalian and non-mammalian brain development.
data type Transcriptome or Gene Expression
publication
properties 
{...}
dbXrefs
sra-run  DRR096003DRR096004DRR099449DRR099450DRR099451DRR099452
sra-submission  DRA005904DRA006015
biosample  SAMD00083436SAMD00083437SAMD00089402SAMD00089403SAMD00089404SAMD00089405
sra-study  DRP003697
sra-sample  DRS047613DRS047614DRS049059DRS049060DRS049061DRS049062
sra-experiment  DRX089499DRX089500DRX092927DRX092928DRX092929DRX092930
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2017-06-20T03:44:23+09:00
dateModified 2017-06-22T13:00:53+09:00
datePublished 2017-06-22T13:00:53+09:00