home > bioproject > PRJDB5882
identifier PRJDB5882
type bioproject
sameAs
organism Citrus unshiu
title Satsuma mandarin genome sequencing
description This study intended to reveal a genome sequence of Satsuma mandarin (Citrus unshiu Marc.). The goal of the project is developing useful DNA markers for the marker-assisted selection, and identifying genes that determine various traits of importance. Satsuma mandarin is the major citrus variety in Japan, and also occupied a significant position in the world citrus industry. It had also been used as a breeding parent in NIFTS, and produced more than 30 citrus varieties. Developping DNA markers and high-density genetic map is anticipated to develop DNA markers that linked to important agronomical traits. However, many citrus varieties are highly heterozygous and show suppression of recombination for the considerable portion of their chromosomes, and these obstacles were difficult to be avoided by the classical approach consequently. The obtained genome sequences would be useful to develop high precision DNA markers (SSR, SNP or indel) according to the genome sequence of Satsuma mandarin, and genome sequence itself will identify the gene of interest.
data type Genome sequencing and assembly 
properties 
{...}
dbXrefs
sra-run  DRR142810DRR142811DRR142812DRR142813DRR142814DRR142815DRR142816DRR142817DRR142818DRR142819DRR142820DRR142821DRR142822
sra-submission  DRA007071
biosample  SAMD00083908SAMD00131342SAMD00131343SAMD00131344SAMD00131345SAMD00131346
sra-sample  DRS071376DRS071376DRS071377DRS071378DRS071379DRS071380DRS071381
sra-experiment  DRX135524DRX135525DRX135526DRX135527DRX135528DRX135529DRX135530DRX135531
distribution JSONJSON-LD
status public
visibility unrestricted-access
dateCreated 2017-06-22T00:00:00+0000
dateModified 2017-06-22T00:00:00+0000
datePublished 2017-12-21T00:00:00+0000