home > bioproject > PRJDB6260
identifier PRJDB6260
type bioproject
sameAs
organism Elasmobranchii
title Elasmobranch shark genome evolution
description Modern cartilaginous fishes are divided into elasmobranchs (sharks, rays, and skates) and chimaeras, and the lack of established whole-genome sequence information for elasmobranchs has prevented our understanding of early vertebrate evolution and their unique phenotypic traits. Here we report whole genome sequencing and related molecular analysis of two elasmobranch shark species. Their genomes, whose sizes surpass that of ours, harbor sparse distribution of conserved genic and regulatory elements and exhibit reduced molecular evolutionary rates. Our investigation uncovered altered sensory gene repertory possibly associated with adaptation to unique underwater niche and relict members of the Hox C cluster previously hypothesized to be absent in elasmobranchs. We also showed the antiquity of gene repertory governing mammalian homeostasis and reproduction, including Leptin, by identifying their shark homologs. Our study provides the foundation of comprehensive exploration of morphology, physiology, and behavior of elasmobranch sharks at the molecular level, especially those with sustainable supply of animal samples.
data type Genome Sequencing Epigenomics Transcriptome or Gene Expression
publication
30297745
properties 
{...}
dbXrefs
sra-run  DRR111712DRR111713DRR111714DRR111715DRR111716DRR111717DRR111718DRR111719DRR111720DRR111721 More
sra-submission  DRA006338
sra-analysis  DRZ014309DRZ014310DRZ014311DRZ014312DRZ014313DRZ014314DRZ014315DRZ014316DRZ014317DRZ014318 More
biosample  SAMD00098924SAMD00098925SAMD00098926SAMD00098927SAMD00098928SAMD00098929SAMD00098930SAMD00098931SAMD00098932SAMD00098933 More
sra-study  DRP004362
sra-sample  DRS072512DRS072513DRS072514DRS072515DRS072516DRS072517DRS072518DRS072519DRS072520DRS072521 More
sra-experiment  DRX104779DRX104780DRX104781DRX104782DRX104783DRX104784DRX104785DRX104786DRX104787DRX104788 More
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status public
visibility unrestricted-access
dateCreated 2017-08-21T04:25:11+09:00
dateModified 2022-08-23T05:28:50+09:00
datePublished 2018-07-31T16:18:28+09:00