home > bioproject > PRJDB6419
identifier PRJDB6419
type bioproject
sameAs
organism rhizosphere metagenome
title Comparison of rhizosphere soils of Allium plants and non-Allium plants
description It has been well known that intercropping and rotation cropping with Allium plants such as Welsh onion, onion and Chinese chive, reduce the incidence of Fusarium wilt (one of the destructive soil-borne diseases of plants). We focused on the rhizobacterial communities of Allium plants to understand the disease suppression induced by cultivation of Allium plants. In this project, we extracted soil DNA from three types of rhizosphre soils of Allium plants (Welsh onion, onion, nad Chinese chive), and two types of non-Allium plants (cucumber and tomato), and bulk soil. We performed amplicon sequencings with two variable regions of 16S rRNA gene, V3-4 region and V6 region, in order to compare the rhizobacterial communities of Allium plants with those of non-Allium plants.
data type Metagenome
publication
properties 
{...}
dbXrefs
sra-run  DRR107697DRR107698DRR107699DRR107700DRR107701DRR107702DRR107703DRR107704DRR107705DRR107706 More
sra-submission  DRA006258DRA006760
biosample  SAMD00097184SAMD00097185SAMD00097186SAMD00097187SAMD00097188SAMD00097189SAMD00097190SAMD00097191SAMD00097192SAMD00097193 More
sra-study  DRP005493
sra-sample  DRS108526DRS108527DRS108528DRS108529DRS108530DRS108531DRS108532DRS108533DRS108534DRS108535 More
sra-experiment  DRX100786DRX100787DRX100788DRX100789DRX100790DRX100791DRX100792DRX100793DRX100794DRX100795 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2017-10-05T04:46:52+09:00
dateModified 2019-10-06T13:01:04+09:00
datePublished 2019-10-06T13:01:03+09:00