home > bioproject > PRJDB6596
identifier PRJDB6596
type bioproject
sameAs
organism Mycobacterium sp. EPa45
title Transcriptomic profiling of Mycobacterium sp. EPa45 during cultivation in the presence of phenanthrene
description Transcriptome analysis of a phenanthrene-degrading bacterium in rich liquid medium with and without phenanthrene was performed. This analysis clarified that many genes predicted to be involved in phenanthrene metabolism and iron uptake are transcriptionally induced in the presence of phenanthrene. Overall design: The EPa45 cells grown in rich liquid medium with and without phenanthrene were used for RNA-seq analysis on the Illumina HiSeq 2500 platform. Three independent experiments were performed.
data type Transcriptome or Gene Expression
publication
properties 
{...}
dbXrefs
sra-run  DRR119988DRR119989DRR119990DRR119991DRR119992DRR119993
sra-submission  DRA006415
biosample  SAMD00108329SAMD00108330SAMD00108331SAMD00108332SAMD00108333SAMD00108334
sra-study  DRP004931
sra-sample  DRS091814DRS091815DRS091816DRS091817DRS091818DRS091819
sra-experiment  DRX112990DRX112991DRX112992DRX112993DRX112994DRX112995
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2017-12-12T10:33:26+09:00
dateModified 2019-03-29T13:07:56+09:00
datePublished 2019-03-29T13:07:56+09:00