home > bioproject > PRJDB6692
identifier PRJDB6692
type bioproject
sameAs
organism root metagenome
title Identification of nitrogen-fixing Bradyrhizobium associated with roots of field-grown sorghum by metagenome analyses
description Sorghum (Sorghum bicolor) grown worldwide. Although nitrogen fixation in sorghum has been studied since the 1970s, many of the N2-fixing bacteria in field-grown sorghum plants have not been identified because efforts were culture-dependent. The aim of this study was to identify functional N2-fixing bacteria associated with field-grown sorghum by omics approaches. To avoid contamination of plant DNA, we applied the combination of metagenome analyses based on extracted bacterial cells isolated from plant tissues. Sorghum plants were grown in a field in Fukushima, Japan, and bacterial cells was extracted from roots which was harvested at almost 100 days after transplanting.
data type Metagenome
publication
properties 
{...}
dbXrefs
sra-run  DRR121402DRR121403DRR121404DRR121405DRR121406DRR121407DRR121408DRR121409DRR121410DRR121411 More
sra-submission  DRA006466
biosample  SAMD00110663SAMD00110664SAMD00110665SAMD00110666SAMD00110667SAMD00110668SAMD00110669SAMD00110670SAMD00110671SAMD00110672 More
sra-study  DRP004021
sra-sample  DRS058239DRS058240DRS058241DRS058242DRS058243DRS058244DRS058245DRS058246DRS058247DRS058248 More
sra-experiment  DRX114404DRX114405DRX114406DRX114407DRX114408DRX114409DRX114410DRX114411DRX114412DRX114413 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2018-01-23T07:20:23+09:00
dateModified 2018-02-01T13:03:29+09:00
datePublished 2018-02-01T13:03:28+09:00