home > bioproject > PRJDB6730
identifier PRJDB6730
type bioproject
sameAs
organism Mus musculus
title Gene expression profiles in control and Setdb1-KD PGCLCs
description In mice, primordial germ cells (PGCs), which are the precursors of gametes, are fate-determined from pluripotent epiblasts. The epigenetic regulation of PGC fate determination remains poorly understood. We identify histone methyltransferase Setdb1 as an epigenetic regulator of PGC fate determination by an RNA interference screen for histone modifier genes involved in PGC-like cell (PGCLC) induction in culture. To comprehensively investigate changes in gene expression following Setdb1-KD during PGCLC induction, we carried out RNA sequencing (RNA-seq) analysis to compare the transcriptome of the Setdb1-KD cells with that of the control KD cells 2 days after induction of PGCLCs
data type Transcriptome or Gene Expression
publication
properties 
{...}
dbXrefs
sra-run  DRR124363DRR124364DRR124365DRR124366DRR124367DRR124368
sra-submission  DRA006543
biosample  SAMD00111839SAMD00111840SAMD00111841SAMD00111842SAMD00111843SAMD00111844
sra-study  DRP004610
sra-sample  DRS080096DRS080097DRS080098DRS080099DRS080100DRS080101
sra-experiment  DRX117200DRX117201DRX117202DRX117203DRX117204DRX117205
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status public
visibility unrestricted-access
dateCreated 2018-01-31T04:07:24+09:00
dateModified 2018-11-26T13:05:46+09:00
datePublished 2018-11-26T13:05:45+09:00