home > bioproject > PRJDB7309
identifier PRJDB7309
type bioproject
sameAs
organism lake water metagenome
title Shotgun metagenomics of virion (0.22 micrometer filtrate) in Lake Biwa (2016-2017)
description Shotgun metagenome sequencing was performed to reconstruct viral genomes in Lake Biwa, Japan. Water samples were collected from the epliminion (5 m) and hypolimnion (65 m) at a pelagic station of the lake. Virion was collected from 0.22 micrometre filtrate, concentrated by the FeCl sedimentation, purified by thr CsCl ultracentrifuge, and the DNA was extracted, fragmented, and sequenced by the Miseq platform (2 x 300 bp).
data type Metagenome
publication
31608575
properties 
{...}
dbXrefs
sra-run  DRR147671DRR147672DRR147673DRR147674DRR147675DRR147676DRR147677DRR147678DRR147679DRR147680 More
sra-submission  DRA007216
biosample  SAMD00134883SAMD00134884SAMD00134885SAMD00134886SAMD00134887SAMD00134888SAMD00134889SAMD00134890SAMD00134891SAMD00134892 More
sra-study  DRP005440
sra-sample  DRS107587DRS107588DRS107589DRS107590DRS107591DRS107592DRS107593DRS107594DRS107595DRS107596 More
sra-experiment  DRX138422DRX138423DRX138424DRX138425DRX138426DRX138427DRX138428DRX138429DRX138430DRX138431 More
distribution JSONJSON-LD
Download
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status public
visibility unrestricted-access
dateCreated 2018-08-10T05:03:22+09:00
dateModified 2020-08-07T02:43:01+09:00
datePublished 2019-09-12T13:02:18+09:00