home > bioproject > PRJDB7702
identifier PRJDB7702
type bioproject
sameAs
organism coral reef metagenome
title Associated bacterial profiles in Porites lutea tissues affected by pink pigmentation response (PPR)
description This study describes the changes in associated bacteria in the coral Porites lutea showing pink pigmentation response (PPR) using Metagenomic approach. Bacterial communities were isolated from healthy tissues of P. lutea, affected by PPR and recovered from PPR. Also samples isolated from surrounding waters and sediment were analyzed. Sediment samples showed higher diversity, followed by coral tissues showing PPR signs. Unclassified bacteria, particularly the bacteria CAB-I, BB2H16SI and Alphaproteobacteria, especially Methylobacterium predominated in PPR tissues. In contrast, Gammaproteobacteria, especially Endozoicomonas predominated in healthy tissues. We propose to use Endozoicomonas, CAB-I, BB2H16S and Methylobacterium as biomarkers to explore the progress and occurrence of PPR in P. lutea.
data type Metagenome
publication
properties 
{...}
dbXrefs
sra-run  DRR160961DRR160962DRR160963DRR160964DRR160965DRR288240
sra-submission  DRA007633
biosample  SAMD00152323SAMD00152324SAMD00152325SAMD00152326SAMD00152327SAMD00316511
sra-study  DRP004628
sra-sample  DRS080629DRS080630DRS080631DRS080632DRS080633DRS180540
sra-experiment  DRX151586DRX151587DRX151588DRX151589DRX151590DRX277696
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2018-11-24T11:18:21+09:00
dateModified 2018-11-26T08:23:32+09:00
datePublished 2018-11-26T06:26:59+09:00