home > bioproject > PRJDB7911
identifier PRJDB7911
type bioproject
sameAs
organism Arabidopsis thaliana
title ldl3 mutant vs wild-type in Arabidopsis de novo shoot regeneration_RNA-seq and ChIP-seq
description Genome-wide histone modifications and gene expression profiles of Arabidopsis root explants from ldl3 and wild-type (Col-0) seedlings were assessed during de novo shoot regeneration process. Root explants (0-1cm from the root tip) were excised from seedlings 6 days after germination, and cultured on auxin-rich callus-inducing medium (CIM) for 14 days and subsequently on cytokinin-rich shoot-inducing medium (SIM). The root explants were collected on days 0 and 14 on CIM, days 1 and 7 on SIM, and were subjected to RNA-seq and ChIP-seq.
data type Epigenomics Transcriptome or Gene Expression
publication
properties 
{...}
dbXrefs
sra-run  DRR168244DRR168245DRR168246DRR168247DRR168248DRR168249DRR168250DRR168251DRR168252DRR168253 More
sra-submission  DRA008014
biosample  SAMD00160483SAMD00160484SAMD00160485SAMD00160486SAMD00160487SAMD00160488SAMD00160489SAMD00160490SAMD00160491SAMD00160492 More
sra-study  DRP004816
sra-sample  DRS088021DRS088022DRS088023DRS088024DRS088025DRS088026DRS088027DRS088028DRS088029DRS088030 More
sra-experiment  DRX158858DRX158859DRX158860DRX158861DRX158862DRX158863DRX158864DRX158865DRX158866DRX158867 More
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status public
visibility unrestricted-access
dateCreated 2019-01-21T04:26:00+09:00
dateModified 2019-02-10T13:07:25+09:00
datePublished 2019-02-10T13:07:25+09:00