home > bioproject > PRJDB8407
identifier PRJDB8407
type bioproject
sameAs
organism Mus musculus
title KDM2B in polycomb repressive complex 1.1 functions as a tumor suppressor in the initiation of T- cell leukemogenesis
description KDM2B together with RING1B, PCGF1, and BCOR or BCORL1 comprise polycomb repressive complex 1.1 (PRC1.1), a non-canonical PRC1 that catalyzes H2AK119ub1. It binds to non-methylated CpG islands through its zinc finger-CxxC (ZF-CxxC) DNA binding domain and recruits the complex to target gene loci. Recent studies identified the loss of function mutations in the PRC1.1 gene, BCOR and BCORL1 in human T-cell acute lymphoblastic leukemia (T-ALL). We previously reported that Bcor insufficiency induces T-ALL in mice, supporting a tumor suppressor role for BCOR. However, the function of BCOR responsible for tumor suppression, either its co-repressor function for BCL6 or that as a component of PRC1.1, remains unclear. We herein examined mice specifically lacking the ZF-CxxC domain of KDM2B in hematopoietic cells. Similar to Bcor- deficient mice, Kdm2b-deficient mice developed lethal T-ALL mostly in a NOTCH1-dependent manner. A ChIP sequence analysis of thymocytes revealed the binding of KDM2B at promoter regions, at which BCOR and EZH2 co-localized. KDM2B target genes markedly overlapped with those of NOTCH1 in human T-ALL cells, suggesting that non-canonical PRC1.1 antagonizes NOTCH1-mediated gene activation. KDM2B target genes were expressed at higher levels than the others and were marked with high levels of H2AK119ub1 and H3K4me3, but low levels of H3K27me3, suggesting that KDM2B target genes are transcriptionally active or primed for activation. These results indicate that PRC1.1 plays a key role in restricting excessive transcriptional activation by active NOTCH1, thereby acting as a tumor suppressor in the initiation of T-cell leukemogenesis.
data type Epigenomics Transcriptome or Gene Expression
publication
properties 
{...}
dbXrefs
sra-run  DRR180748DRR180749DRR180750DRR180751DRR180752DRR180753DRR180754DRR180755DRR180756DRR180757 More
sra-submission  DRA008519
biosample  SAMD00173562SAMD00173563SAMD00173565SAMD00173564SAMD00173568SAMD00173567SAMD00173571SAMD00173572SAMD00173573SAMD00173575 More
sra-study  DRP005145
sra-sample  DRS098525DRS098526DRS098528DRS098527DRS098531DRS098530DRS098534DRS098535DRS098536DRS098538 More
sra-experiment  DRX171254DRX171255DRX171256DRX171257DRX171258DRX171259DRX171260DRX171261DRX171262DRX171263 More
distribution JSONJSON-LD
Download
ddbj_core_bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2019-06-04T08:18:34+09:00
dateModified 2019-06-06T00:11:33+09:00
datePublished 2019-06-06T00:11:33+09:00