home > bioproject > PRJDB8507
identifier PRJDB8507
type bioproject
sameAs
organism Bos taurus
title Transcriptome in bovine whole blastocyst and isolated inner cell mass with re-cavitation
description The purpose of this project is to investigate transcriptome in isolated inner cell mass (ICM) with re-formation of blastocoel as compared to whole blastocyst (Whole) in cattle. The bovine blastocysts were prepared by in vitro fertilization (IVF) and subsequent in vitro culture (IVC). For isolation of the ICM, the blastocysts were treated with phosphate buffered saline (PBS) containing 0.2% Triton X-100. The embryos were carefully washed, followed by gentle pipetting to collect pure ICMs without trophectoderm. These isolated ICMs were collected in the embryo culture medium. The iICMs with an obvious cavity were defined as "re-cavitated iICM" (re-iICM). The analysis showed that transcriptome of re-iICM was similar to Whole.
data type Transcriptome or Gene Expression
publication
properties 
{...}
dbXrefs
sra-run  DRR184141DRR184142DRR184143DRR184144DRR184145DRR184146
sra-submission  DRA008645
biosample  SAMD00178009SAMD00178010SAMD00178011SAMD00178012SAMD00178013SAMD00178014
sra-study  DRP005566
sra-sample  DRS112981DRS112982DRS112983DRS112984DRS112985DRS112986
sra-experiment  DRX174622DRX174623DRX174624DRX174625DRX174626DRX174627
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2019-06-27T13:36:59+09:00
dateModified 2019-11-08T13:04:06+09:00
datePublished 2019-11-08T13:04:05+09:00