home > bioproject > PRJDB8724
identifier PRJDB8724
type bioproject
sameAs
organism Brachypodium distachyon
title Time-series transcriptome analysis of Brachypodium accessions after inoculation with Rhizoctonia solani
description We performed time-series transcriptome analysis of three Brachypodium distachyon accessions, Bd21, Bd3-1, and Tek-3, after inoculation with the sheath blight fungus Rhizoctonia solani. We sampled R. solani-inoculated leaves from these accessions at five time points including 0, 4, 8, 16, and 24 hours post inoculation (hpi) with three biological replicates. Total RNA was extracted from the leaves using the Nucleospin RNA Plant kit (Takara Bio). Library preparation was performed using the Truseq RNA library preparation kit (Illumina) according to the manufacturer's instructions, and the prepared libraries were sequenced with the Hiseq4000 sequencer (Illumina).
data type Transcriptome or Gene Expression
publication
properties 
{...}
dbXrefs
sra-run  DRR190659DRR190660DRR190661DRR190662DRR190663DRR190664DRR190665DRR190666DRR190667DRR190668 More
sra-submission  DRA008911
biosample  SAMD00184417SAMD00184418SAMD00184419SAMD00184420SAMD00184421SAMD00184422SAMD00184423SAMD00184424SAMD00184425SAMD00184426 More
sra-study  DRP006443
sra-sample  DRS150114DRS150115DRS150116DRS150117DRS150118DRS150119DRS150120DRS150121DRS150122DRS150123 More
sra-experiment  DRX181123DRX181124DRX181125DRX181126DRX181127DRX181128DRX181129DRX181130DRX181131DRX181132 More
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status public
visibility unrestricted-access
dateCreated 2019-08-30T01:22:52+09:00
dateModified 2020-08-24T13:09:31+09:00
datePublished 2020-08-24T13:09:31+09:00