home > bioproject > PRJDB8921
identifier PRJDB8921
type bioproject
sameAs
organism Pleurotus ostreatus
title Comparative transcriptome analysis among the ligninolysis-deficient stains
description White-rot fungi play a pivotal role in the global carbon cycle because they are able to degrade lignin present in wood biomass efficiently. However, the molecular mechanisms underlying lignin degradation by white-rot fungi is far from being fully deciphered. Recently, mutations in four genes, wtr1, chd1, pex1 and gat1 were shown to cause defects in the ability to degrade wood lignin in the white-rot fungus Pleurotus ostreatus. In this study, we conducted comparative transcriptome analysis to identify genes that are significantly up- or down-regulated in these ligninolytic-deficient mutant strains when grown on beech wood sawdust medium.. These results provide new insights into the molecular mechanisms underlying regulation of wood-degrading enzyme genes in P. ostreatus.
data type Transcriptome or Gene Expression
publication
properties 
{...}
dbXrefs
sra-run  DRR205033DRR205034DRR205035DRR205036DRR205037DRR205038DRR205039DRR205040DRR222563DRR222564 More
sra-submission  DRA009474DRA010037DRA010160DRA010676
biosample  SAMD00191575SAMD00191576SAMD00191577SAMD00191578SAMD00191579SAMD00191580SAMD00191581SAMD00191582SAMD00220603SAMD00220604 More
sra-study  DRP005749
sra-sample  DRS119794DRS119795DRS119796DRS119797DRS119798DRS119799DRS119800DRS119801DRS138624DRS138625 More
sra-experiment  DRX195432DRX195433DRX195434DRX195435DRX195436DRX195437DRX195438DRX195439DRX212848DRX212849 More
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status public
visibility unrestricted-access
dateCreated 2019-10-28T23:25:58+09:00
dateModified 2022-04-22T00:09:55+09:00
datePublished 2020-01-21T13:03:42+09:00