| identifier |
PRJDB8950 |
| type |
bioproject |
| sameAs |
|
| organism |
Arabidopsis thaliana
|
| title |
Genome-wide analysis of mRNA cleavage sites in in Arabidopsis thaliana using seedling |
| description |
In a previous study, a high-throughput approach for genome-wide profiling of RNA cleavage sites was developed (e.g. Parallel analysis of RNA end (PARE), 5'P sequencing (5Pseq), Genome-wide mapping of uncapped transcripts (GMUCT)), However, there were some problems with experimental procedures (e.g. Many of the cleavage sites may be mapped in the 3' transcripts; It was difficult to accurately identify the multiple cleavage sites in one mRNA). Thus, we performed truncated RNA end sequencing (TREseq) in Arabidopsis thaliana (seedling, whole plants were collected from 2 days after germination) to determine the truncated 5' RNA ends (cleavage sites) and analyze the sequence feature around the cleavage sites. |
| data type |
Transcriptome or Gene Expression
|
| publication |
|
| properties ▽ |
{...}
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| dbXrefs |
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| distribution |
JSONJSON-LD
|
| Download |
|
| status |
public |
| visibility |
unrestricted-access |
| dateCreated |
2019-11-04T10:18:34+09:00 |
| dateModified |
2020-11-16T13:18:25+09:00 |
| datePublished |
2020-11-16T13:18:24+09:00 |