home > bioproject > PRJDB9881
identifier PRJDB9881
type bioproject
sameAs
organism Mus musculus
title Analysis of gene expression and chromatin structure during zygotic gene activation (ZGA) in round spermatid injection derived embryos
description Round spermatid (RS) is the immature male germ cells. RS has a haploid genome but not flagellum so that they can not fertilize the egg in natural. Some of the men can produce RS but no spermatozoa. If RS was artificially injected into the egg, the resultant embryos could develop to the full-term. However, the success rate is very lower compared to matured spermatozoa. Our goal is to reveal the cause of the lower offspring rate of ROSI (round spermatid injection)-derived embryos and to identify the solution. Since round spermatid has histone-based chromatin structure, we assumed that there are abnormalities in epigenome in ROSI derived embryos. To assess this, ATAC-seq and RNA-seq analysis were performed.
data type Epigenomics Transcriptome or Gene Expression
publication
properties 
{...}
dbXrefs
sra-run  DRR228577DRR228578DRR228579DRR228580DRR228581DRR228582DRR228583DRR228584DRR228585DRR228586 More
sra-submission  DRA010218DRA010219DRA011368DRA011577
biosample  SAMD00228052SAMD00228053SAMD00228054SAMD00228055SAMD00228056SAMD00228057SAMD00228058SAMD00228059SAMD00228060SAMD00228061 More
sra-study  DRP008535
sra-sample  DRS239717DRS239718DRS239719DRS239720DRS239721DRS239722DRS239723DRS239724DRS239725DRS239726 More
sra-experiment  DRX218841DRX218842DRX218843DRX218844DRX218845DRX218846DRX218847DRX218848DRX218849DRX218850 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2020-05-14T06:44:29+09:00
dateModified 2022-05-14T13:04:47+09:00
datePublished 2022-05-14T13:04:47+09:00