home > bioproject > PRJEB10326
identifier PRJEB10326
type bioproject
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organism
title The Effect of Propidium Monoazide Treatment on Identification of Bacterial Communities of Very Low Birth Weight Preterm Infant Faeces Analysed by 16s rRNA Gene Sequencing
description Next-gen sequencing technology had provided a platform for rapid advancement in the field of microbial ecology. The 11 original bacterial phyla, identified by Woese, have been expanded to over 50 following widespread use of NGS techniques. However, NGS is not without it’s flaws. This study will attempt to improve the validity of the NGS protocol by validating the use of propidium monoazide: a dsDNA chelating agent; for non-viable cell exclusion from clinical samples. This will enable researchers and clinicians to identify bacterial phyla actively affecting the biotopes of the preterm infant gut and tailor targeted therapy accordingly.
data type Other
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publication
Reducing Viability Bias in Analysis of Gut Microbiota in Preterm Infants at Risk of NEC and Sepsis.
properties 
{...}
dbXrefs
sra-run  ERR983836ERR983837ERR983838ERR983839ERR983840ERR983841ERR983842ERR983843ERR983844ERR983845 More
sra-submission  ERA466399ERA473084
biosample  SAMEA3505174SAMEA3505175SAMEA3505176SAMEA3505177SAMEA3505178SAMEA3505179SAMEA3505180SAMEA3505181SAMEA3505182SAMEA3505183 More
sra-study  ERP011562
sra-sample  ERS812323ERS812324ERS812325ERS812326ERS812327ERS812328ERS812329ERS812330ERS812331ERS812332 More
sra-experiment  ERX1065057ERX1065058ERX1065059ERX1065060ERX1065061ERX1065062ERX1065063ERX1065064ERX1065065ERX1065066 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2015-09-15T00:00:00Z
dateModified 2015-09-15T00:00:00Z
datePublished 2015-09-14T00:00:00Z