home > bioproject > PRJEB11511
identifier PRJEB11511
type bioproject
sameAs
organism
title Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the tyrollean glacier mummy
description The stomach bacterium Helicobacter pylori is one of the most prevalent human pathogens. It has dispersed globally with its host for the past 100,000 years leading in a distinct phylogeographic pattern in modern H. pylori populations. This phylogeography is used to deduce both recent and ancient human migrations (1, 2). Owing to the complex demographic history of Europe, different hypotheses about the origin of the extant European H. pylori population (hpEurope) exist (3, 4). Here, we present a 5,300-year-old high-coverage H. pylori genome from a European Copper Age glacier mummy. Comparative sequence analysis with contemporary H. pylori classifies the “Iceman” Helicobacter as a cagA positive vacA s1a/i1/m1 type strain, most closely resembling a strain that today is commonly found in Central and South Asia and that substantially shaped the genomes of modern European H. pylori strains.
data type Other
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publication
The 5300-year-old Helicobacter pylori genome of the Iceman.
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dbXrefs
sra-run  ERR1094777ERR1094778ERR1094779ERR1094780ERR1094781ERR1094782ERR1094783ERR1094784ERR1094785ERR1094786 More
sra-submission  ERA526592
biosample  SAMEA3635116SAMEA3635117SAMEA3635118SAMEA3635119SAMEA3635120SAMEA3635121SAMEA3635122SAMEA3635123SAMEA3635124SAMEA3635125 More
sra-study  ERP012908
sra-sample  ERS942265ERS942266ERS942267ERS942268ERS942269ERS942270ERS942271ERS942272ERS942273ERS942274 More
sra-experiment  ERX1174263ERX1174264ERX1174265ERX1174266ERX1174267ERX1174268ERX1174269ERX1174270ERX1174271ERX1174272 More
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status public
visibility unrestricted-access
dateCreated 2016-01-13T00:00:00Z
dateModified 2016-01-13T00:00:00Z
datePublished 2016-01-07T00:00:00Z