home > bioproject > PRJEB11698
identifier PRJEB11698
type bioproject
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title Evidence of natural hybridization in Brazilian wild lineages of Saccharomyces cerevisiae
description The natural biology of Saccharomyces cerevisiae, the best known unicellular model eukaryote, remains poorly documented and understood. In the Northern Hemisphere, wild populations of S. cerevisiae have recently been found in association with oak trees but in spite of these advances, it has until now not been possible to determine the natural distribution of S. cerevisiae at a global scale. Here we investigate the occurrence of S. cerevisiae in Brazil, a tropical region where oaks and other Fagaceae are absent. We report a candidate natural niche of S. cerevisiae in South America and, using whole genome data, we uncover new lineages that appear to have as closest relatives the wild populations found in North America and Japan. A population structure analysis revealed the penetration of the wine genotype into the wild Brazilian population, a first observation of the impact of domesticated microbe lineages on the genetic structure of wild populations. Unexpectedly, the Brazilian population shows conspicuous evidence of hybridization with population B of S. paradoxus. Introgressions from S. paradoxus were significantly enriched in genes encoding secondary active transmembrane transporters. We hypothesize that hybridization in tropical wild lineages may have facilitated the niche transition accompanying the colonization of the tropical ecosystem.
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dbXrefs
sra-run  ERR1111486ERR1111487ERR1111488ERR1111489ERR1111490ERR1111491ERR1111492ERR1111493ERR1111494ERR1111495 More
sra-submission  ERA531644ERA531645
biosample  SAMEA3648626SAMEA3648627SAMEA3648628SAMEA3648629SAMEA3648630SAMEA3648631SAMEA3648632SAMEA3648633SAMEA3648634SAMEA3648635 More
sra-study  ERP013106
sra-sample  ERS955775ERS955776ERS955777ERS955778ERS955779ERS955780ERS955781ERS955782ERS955783ERS955784 More
sra-experiment  ERX1191028ERX1191029ERX1191030ERX1191031ERX1191032ERX1191033ERX1191034ERX1191035ERX1191036ERX1191037 More
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status public
visibility unrestricted-access
dateCreated 2016-01-13T00:00:00Z
dateModified 2016-01-13T00:00:00Z
datePublished 2016-01-08T00:00:00Z