home > bioproject > PRJEB11805
identifier PRJEB11805
type bioproject
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organism
title WES sequencing of 34 hepatoblastoma tumors and controls
description Hepatoblastoma (HB) is the most common primary liver cancer in children; however, few pre-treatment HB tumors have been molecularly profiled. Consequently, there are no validated prognostic or therapeutic biomarkers available for HB patients. We report on the analysis of molecular profiles obtained from 88 clinically-annotated HB tumors. This analysis points to three distinct risk-stratifying molecular HB subtypes—termed low, intermediate and high risk—that are characterized by differential activation of hepatic progenitor cell markers and metabolic pathways. High-risk tumors are characterized by high NFE2L2 activity, high LIN28B, HMGA2, SALL4 and AFP expression, low let-7 expression and HNF1A activity, and high coordinated expression of oncofetal proteins and stem cell markers. Testing of a 35 HB validation set suggests that immunohistochemical analysis using antibodies targeting these genes may be useful for screening diagnostic specimens and providing therapeutic guidance for the treatment of HB patients. This dataset includes WES of 34 HBs.
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dbXrefs
sra-run  ERR1143240ERR1143241ERR1143242ERR1143243ERR1143244ERR1143245ERR1143246ERR1143247ERR1143248ERR1143249 More
sra-submission  ERA535483
biosample  SAMEA3670657SAMEA3670623SAMEA3670658SAMEA3670624SAMEA3670659SAMEA3670625SAMEA3670660SAMEA3670626SAMEA3670661SAMEA3670627 More
sra-study  ERP013214
sra-sample  ERS977806ERS977772ERS977807ERS977773ERS977808ERS977774ERS977809ERS977775ERS977810ERS977776 More
sra-experiment  ERX1222081ERX1222082ERX1222083ERX1222084ERX1222085ERX1222086ERX1222087ERX1222088ERX1222089ERX1222090 More
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status public
visibility unrestricted-access
dateCreated 2015-11-19T00:00:00Z
dateModified 2015-11-19T00:00:00Z
datePublished 2015-11-19T00:00:00Z