home > bioproject > PRJEB11849
identifier PRJEB11849
type bioproject
sameAs
organism
title Comparison of transcriptomic contents of a wild type Staphylococcus strain (HG001) and the spdC deleted derivative by RNAseq analysis.
description We have characterized links between the SpdC protein and the WalKR two-component system. We have generated an spdC-deleted strain. This strain behaves like the WT parental strain, at least concerning its growth rate in TSB rich medium at 37°C under aerobiosis. The WT and spdC derivatives were grown in TSB rich medium until mid-exponential phase (OD600nm=1) and RNA were extracted for further RNAseq analysis. Three biological replicates were analyzed for each strain. Using a cut off fold change higher than 2 with a p value less than 0.05, we found that 42 genes were repressed in the spdC mutant strain and 65 were activated. Among them, 24 were previously identified as WalKR-regulated genes, thus confirming our hypothesis concerning the role of SpdC in modulating the WalKR regulating activity. In particular, we have shown that SpdC in involved in regulation of expression of 4 genes encoding cell wall hydrolases and 10 virulence genes.
data type Other
organization
publication
properties 
{...}
dbXrefs
sra-run  ERR1143985ERR1143986ERR1143987ERR1143988ERR1143989ERR1143990
sra-submission  ERA535790
biosample  SAMEA3672563SAMEA3672564SAMEA3672565SAMEA3672566SAMEA3672567SAMEA3672568
sra-study  ERP013265
sra-sample  ERS979712ERS979713ERS979714ERS979715ERS979716ERS979717
sra-experiment  ERX1222795ERX1222796ERX1222797ERX1222798ERX1222799ERX1222800
distribution JSONJSON-LD
Download
bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2016-01-26T00:00:00Z
dateModified 2016-01-26T00:00:00Z
datePublished 2016-01-22T00:00:00Z