home > bioproject > PRJEB11960
identifier PRJEB11960
type bioproject
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title Morphological, electrophysiological and transcriptomic profiling of single neurons using Patch-seq
description The mammalian neocortex is a layered sheet of neural tissue that mediates complex cognitive processes including perception and cognition. Despite its importance, we still lack detailed knowledge of the cellular components of the neocortex. Integrating morphological, electrophysiological and molecular classification schemes into a common framework for defining cell types is challenging due to the limited scope of most single-cell analyses. Here, we developed a protocol for high-throughput electrophysiological and transcriptomic analysis of single neurons that combines whole-cell recordings and single-cell RNA-sequencing, which we call Patch-seq. Using this approach, we fully characterized the electrophysiological and molecular profiles of ~50 neocortical neurons, and show that gene expression patterns can be used to infer the morphological and physiological properties of individual neurons and their corresponding cell type. Our results shed light on the molecular underpinnings of neuronal diversity and demonstrate a path forward for comprehensive cell type characterization in the nervous system.
data type Transcriptome or Gene expression
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publication
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{...}
dbXrefs
sra-run  ERR1156949ERR1156950ERR1156951ERR1156952ERR1156953ERR1156954ERR1156955ERR1156956ERR1156957ERR1156958 More
sra-submission  ERA540828
biosample  SAMEA3682563SAMEA3682564SAMEA3682565SAMEA3682566SAMEA3682567SAMEA3682568SAMEA3682569SAMEA3682570SAMEA3682571SAMEA3682572 More
sra-study  ERP013391
sra-sample  ERS989712ERS989713ERS989714ERS989715ERS989716ERS989717ERS989718ERS989719ERS989720ERS989721 More
sra-experiment  ERX1230355ERX1230356ERX1230357ERX1230358ERX1230359ERX1230360ERX1230361ERX1230362ERX1230363ERX1230364 More
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status public
visibility unrestricted-access
dateCreated 2015-12-22T00:00:00Z
dateModified 2015-12-22T00:00:00Z
datePublished 2015-12-21T00:00:00Z