home > bioproject > PRJEB12257
identifier PRJEB12257
type bioproject
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organism
title Gene expression patterns in developing intestinal organoids exposed to prolonged FGF4- and Wnt-signaling
description Based on the ability of FGF and/or WNT signaling to control posterior fate and intestinal lineage commitment, several groups have reported that treating mouse or human Pluripotent Stem Cell (PSC) derived definitive endoderm (DE) with small molecules or ligands that activate WNT signaling, or a combination of WNT and FGF signaling can induce an intestinal fate in human DE. In this current study, we leverage hESC derived human intestinal organoids (HIOs) to test the hypothesis that the duration of exposure to high levels of FGF and WNT signaling controls regional intestinal identity, with shorter durations generating intestine similar to the proximal duodenum, and longer durations distalizing HIOs to become similar to jejunum/ileum. Our results demonstrate that exposing human definitive endoderm (DE) cultures to short or long incubations of media that activate WNT and FGF siganling results in gene and protein expression profiles that are consistent with tissue that has been patterned into proximal (duodenum) or distal (ileum) small intestine, respectively.
data type Transcriptome or Gene expression
organization
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{...}
dbXrefs
sra-run  ERR1198031ERR1198032ERR1198033ERR1198034ERR1198035ERR1198036ERR1198037ERR1198038ERR1198039ERR1198040 More
sra-submission  ERA549952
biosample  SAMEA3719365SAMEA3719366SAMEA3719367SAMEA3719368SAMEA3719369SAMEA3719370SAMEA3719371SAMEA3719372SAMEA3719373SAMEA3719374 More
sra-study  ERP013713
sra-sample  ERS1026514ERS1026515ERS1026516ERS1026517ERS1026518ERS1026519ERS1026520ERS1026521ERS1026522ERS1026523 More
sra-experiment  ERX1270290ERX1270291ERX1270292ERX1270293ERX1270294ERX1270295ERX1270296ERX1270297ERX1270298ERX1270299 More
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status public
visibility unrestricted-access
dateCreated 2016-01-03T00:00:00Z
dateModified 2016-01-03T00:00:00Z
datePublished 2016-01-02T00:00:00Z