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identifier PRJEB12288
type bioproject
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title Detection of mcr-1 gene in ESBL-E from the Netherlands, 2009-2015
description Recently, the plasmid-mediated colistin resistance gene mcr-1 was found in Enterobacteriaceae from humans, pigs and retail meat in China. Several reports have documented global presence of the gene in Enterobacteriaceae from humans, food animals and food since. We screened several well-characterised strain collections of Enterobacteriaceae, obtained from retail chicken meat and hospitalised patients in the Netherlands between 2009 and 2015, for presence of colistin resistance and the mcr-1 gene. A total of 2,471 Enterobacteriaceae isolates, from surveys in retail chicken meat (196 isolates), prevalence surveys in hospitalised patients (1,247 isolates), clinical cultures (813 isolates) and outbreaks in healthcare settings (215 isolates), were analysed. The mcr-1 gene was identified in three (1.5%) of 196 extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli isolates from retail chicken meat samples in 2009 and 2014. Two isolates were obtained from the same batch of meat samples, most likely representing contamination from a common source. No mcr-1-positive isolates were identified among 2,275 human isolates tested. All mcr-1-positive isolates were colistin-resistant (minimum inhibitory concentration (MIC) > 2 mg/L). Our findings indicate that mcr-1-based colistin-resistance currently poses no threat to healthcare in the Netherlands. They indicate however that continued monitoring of colistin resistance and its underlying mechanisms in humans, livestock and food is needed.
data type Other
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Presence of mcr-1-positive Enterobacteriaceae in retail chicken meat but not in humans in the Netherlands since 2009.
properties 
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dbXrefs
sra-run  ERR1399423ERR1399424ERR1399425
sra-submission  ERA613506
biosample  SAMEA3952459SAMEA3952460SAMEA3952461
sra-study  ERP013747
sra-sample  ERS1139593ERS1139594ERS1139595
sra-experiment  ERX1470682ERX1470683ERX1470684
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status public
visibility unrestricted-access
dateCreated 2016-01-05T00:00:00Z
dateModified 2016-01-05T00:00:00Z
datePublished 2016-01-04T00:00:00Z