home > bioproject > PRJEB12420
identifier PRJEB12420
type bioproject
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organism
title Transcriptome assembly and allele expression in ripening strawberry Fragaria × ananassa fruit.
description We have performed expression analysis by RNAseq of the achene and the receptacle of the ripening fruits at four stages, as well as roots and leaves. Mapping of reads in the updated genome of the wild diploid Fragaria vesca, whose genome is sequenced, validates the expression data and identifies key elements in the fruit developmental process. In addition, a combined strategy, including reference-based and de novo approaches, has been used for the assembly of the transcriptome corresponding to the tissues and stages sampled.
data type Other
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publication
Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle.
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dbXrefs
sra-run  ERR1817339ERR1817340ERR1817341ERR1817342ERR1817343ERR1817344ERR1817345ERR1817346ERR1817347ERR1817348 More
sra-submission  ERA807935
biosample  SAMEA79724668SAMEA79726168SAMEA79725418SAMEA79723918SAMEA79727668SAMEA79726918SAMEA79721668SAMEA79723168SAMEA79722418SAMEA79720918
sra-study  ERP013896
sra-sample  ERS1544414ERS1544416ERS1544415ERS1544413ERS1544418ERS1544417ERS1544410ERS1544412ERS1544411ERS1544409
sra-experiment  ERX1879918ERX1879919ERX1879920ERX1879921ERX1879922ERX1879923ERX1879924ERX1879925ERX1879926ERX1879927 More
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status public
visibility unrestricted-access
dateCreated 2017-09-28T00:00:00Z
dateModified 2017-09-28T00:00:00Z
datePublished