home > bioproject > PRJEB12444
identifier PRJEB12444
type bioproject
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title Transcriptome analysis of the Indian prawn Fenneropenaeus indicus
description We present the complete transcriptome analysis of the Indian white prawn Fenneropenaeus indicus a major aquaculture species. We sequenced the mRNA obtained from hemolymph and hepatopancreas tissues of six healthy animals on Illumina HiSeq and performed a denovo assembly. The denovo assembly was compared with already published transcriptome of related penaeid species Fenneropenaeus merguiensis and Litopenaeus vannamei.We performed a comprehensive survey on the presence of key immunity genes across the three species along with well studied model organisms Drosophila melanogaster and Daphnia pulex. We also analysed the differential expression of miRNA obtained from diseased and healthy shrimps of Fenneropenaeus indicus.
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sra-run  ERR1223448ERR1223449ERR1223450ERR1223451ERR1223452ERR1223453ERR1223495ERR1223496ERR1223497ERR1223498 More
sra-submission  ERA556143ERA556160
biosample  SAMEA3730010SAMEA3730011SAMEA3730012SAMEA3730013SAMEA3730014SAMEA3730015SAMEA3729986SAMEA3729987SAMEA3729988SAMEA3729989 More
sra-study  ERP013924
sra-sample  ERS1037159ERS1037160ERS1037161ERS1037162ERS1037163ERS1037164ERS1037135ERS1037136ERS1037137ERS1037138 More
sra-experiment  ERX1295689ERX1295690ERX1295691ERX1295692ERX1295693ERX1295694ERX1295707ERX1295708ERX1295709ERX1295710 More
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status public
visibility unrestricted-access
dateCreated 2018-12-03T00:00:00Z
dateModified 2018-12-03T00:00:00Z
datePublished