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identifier PRJEB13233
type bioproject
sameAs
organism
title Studying the presence and selection of antibiotic resistance genes
description Antibiotic resistance genes can directly enter WWTPs, pass through the WWTPs, and enter receiving waters, thus potentially spreading resistance and posing a growing concern to the public. My goals here are two-fold. First, I want to test if specific operating metrics, such as temperature, pH, BOD concentration, and N concentration, have an influence on the presence and persistence of antibiotic resistance genes in sludge communities. Second, I want to determine whether antibiotic resistance genes are under active selection within WWTPs. To accomplish this second goal, I will evaluate whether antibiotic resistance genes are actively transcribed, which would suggest potential direct selection. I will also test whether antibiotic resistance genes correlate with biodiversity, where I expect that a negative relationship between biodiversity and antibiotic resistance genes is indicative of active selection. I will use a metagenomics and metatranscriptomics approach to test for the presence and expression of target genes. This will help identify potential selection pressures that enable antibiotic resistance genes to pass through WWTPs and be released into receiving waters.
data type Other
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{...}
dbXrefs
sra-run  ERR1356692ERR1356693ERR1356694ERR1356695ERR1356696ERR1356697ERR1356698ERR1356699ERR1356700ERR1356701 More
sra-submission  ERA601957
biosample  SAMEA3923195SAMEA3923196SAMEA3923197SAMEA3923198SAMEA3923199SAMEA3923200SAMEA3923201SAMEA3923202SAMEA3923203SAMEA3923204 More
sra-study  ERP014782
sra-sample  ERS1110329ERS1110330ERS1110331ERS1110332ERS1110333ERS1110334ERS1110335ERS1110336ERS1110337ERS1110338 More
sra-experiment  ERX1428167ERX1428168ERX1428169ERX1428170ERX1428171ERX1428172ERX1428173ERX1428174ERX1428175ERX1428176 More
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status public
visibility unrestricted-access
dateCreated 2018-03-31T00:00:00Z
dateModified 2018-03-31T00:00:00Z
datePublished