home > bioproject > PRJEB14750
identifier PRJEB14750
type bioproject
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title Integrative and comparative genomics identifies the tyrosine kinase FES as a key melanoma tumor supppressor: WGS
description An incomplete view of the (epi)genetic events that drive melanoma initiation and progression has been a major barrier to rational development of effective therapeutics and prognostic diagnostics for melanoma patients. Recent approaches that integrate human melanoma genomic and transcriptomic data provide unprecedented opportunities to discover oncogenic melanoma drivers. One limitation, however, is that human melanoma genome exhibits a radically altered cytogenetic profile. Hence there is a need for biologically-meaningful approaches to identify and validate lesions that drive melanomagenesis. We combined comparative oncogenomic approaches with mouse modeling to identify new cancer genes/pathways that drive melanoma progression. Spontaneously acquired genetic alterations such as copy-number alterations and specific mutations in mouse tumors of defined genetic origin were identified and used to prioritize relevant lesions from the complex human melanoma genomes. This integrated effort confirmed the importance of several genes and pathways previously implicated in melanoma and identified new putative melanoma tumor suppressor genes. Genetic ablation of one such gene, Fes, cooperated with BRafv600E to accelerate melanomagenesis in mice. This comparative oncogenomic approach has therefore helped discover a series of novel melanoma tumor suppressor genes, including FES, with prognostic and therapeutic relevance in human melanoma.
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dbXrefs
sra-run  ERR1524285ERR1524286ERR1524287ERR1524288ERR1524289ERR1524290ERR1524291ERR1524292ERR1524293ERR1524294 More
sra-submission  ERA673929
biosample  SAMEA4071601SAMEA4071602SAMEA4071603SAMEA4071604SAMEA4071605SAMEA4071606SAMEA4071607SAMEA4071608SAMEA4071609SAMEA4071610 More
sra-study  ERP016417
sra-sample  ERS1242711ERS1242712ERS1242713ERS1242714ERS1242715ERS1242716ERS1242717ERS1242718ERS1242719ERS1242720 More
sra-experiment  ERX1595244ERX1595245ERX1595246ERX1595247ERX1595248ERX1595249ERX1595250ERX1595251ERX1595252ERX1595253 More
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status public
visibility unrestricted-access
dateCreated 2017-05-05T00:00:00Z
dateModified 2017-05-05T00:00:00Z
datePublished