home > bioproject > PRJEB15102
identifier PRJEB15102
type bioproject
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title Quantitative Seq-LGS – a Genome-wide Method for Identifying the Genetic Drivers of Multiple Phenotypes in Malaria Parasites
description Identifying the genetic determinants of phenotypes that impact on disease severity is of fundamental importance for the design of new interventions against malaria. Traditionally, such discovery has relied on labor-intensive approaches that require significant investments of time and resources. By combining Linkage Group Selection (LGS), quantitative whole genome population sequencing and a novel mathematical modeling approach (qSeq-LGS), we simultaneously identified multiple genes underlying two distinct phenotypes; growth rate and strain specific immunity, while removing the need for traditionally required steps such as cloning, individual progeny phenotyping and marker generation. The results highlight the potential of this approach for the identification of genes controlling selectable phenotypes in malaria and other apicomplexan parasites for which experimental genetic crosses are amenable.
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dbXrefs
sra-run  ERR1578989ERR1578990ERR1578991ERR1578992ERR1726998ERR1726999ERR1727000ERR1727001ERR1727006
sra-submission  ERA688243ERA763634ERA763639
biosample  SAMEA4378783SAMEA4378784SAMEA4378785SAMEA4378786SAMEA4545690SAMEA4545692SAMEA4545694SAMEA4545695SAMEA4545691
sra-study  ERP016804
sra-sample  ERS1290232ERS1290233ERS1290234ERS1290235ERS1444869ERS1444871ERS1444873ERS1444874ERS1444870
sra-experiment  ERX1649745ERX1649746ERX1649747ERX1649748ERX1796977ERX1796978ERX1796979ERX1796980ERX1796985
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status public
visibility unrestricted-access
dateCreated 2017-05-31T00:00:00Z
dateModified 2017-05-31T00:00:00Z
datePublished