home > bioproject > PRJEB15387
identifier PRJEB15387
type bioproject
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title Integration of Genomic and Other Epidemiologic Data to Investigate and Control a Cross-Institutional Outbreak of Streptococcus pyogenes
description Single-strain outbreaks of Streptococcus pyogenes infections are common and often go undetected. In 2013, two clusters of invasive group A Streptococcus (iGAS) infection were identified in independent but closely located care homes in Oxfordshire, United Kingdom. Investigation included visits to each home, chart review, staff survey, microbiologic sampling, and genome sequencing. S. pyogenes emm type 1.0, the most common circulating type nationally, was identified from all cases yielding GAS isolates. A tailored whole-genome reference population comprising epidemiologically relevant contemporaneous isolates and published isolates was assembled. Data were analyzed independently using whole-genome multilocus sequencing and single-nucleotide polymorphism analyses. Six isolates from staff and residents of the homes formed a single cluster that was separated from the reference population by both analytical approaches. No further cases occurred after mass chemoprophylaxis and enhanced infection control. Our findings demonstrate the ability of 2 independent analytical approaches to enable robust conclusions from nonstandardized whole-genome analysis to support public health practice.
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dbXrefs
sra-run  ERR1629556ERR1629557ERR1629558ERR1629559ERR1629560ERR1629561ERR1629562ERR1629563ERR1629564ERR1629565 More
sra-submission  ERA705241
biosample  SAMEA4436379SAMEA4436384SAMEA4436387SAMEA4436391SAMEA4436389SAMEA4436393SAMEA4436383SAMEA4436388SAMEA4436380SAMEA4436382 More
sra-study  ERP017112
sra-sample  ERS1347828ERS1347833ERS1347836ERS1347840ERS1347838ERS1347842ERS1347832ERS1347837ERS1347829ERS1347831 More
sra-experiment  ERX1699907ERX1699912ERX1699915ERX1699919ERX1699917ERX1699921ERX1699911ERX1699916ERX1699908ERX1699910 More
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status public
visibility unrestricted-access
dateCreated 2018-09-14T00:00:00Z
dateModified 2018-09-14T00:00:00Z
datePublished