home > bioproject > PRJEB15501
identifier PRJEB15501
type bioproject
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organism
title Bile microbiota in primary sclerosing cholangitis: Impact on disease progression and development of biliary dysplasia
description Primary sclerosing cholangitis (PSC) is a chronic inflammatory liver disease leading to strictures in intra- and extrahepatic bile ducts and finally to cholestasis and secondary biliary cirrhosis. The chronic inflammation is associated with increased proliferation of biliary epithelial cells and a markedly increased risk of development of biliary dysplasia and cholangiocarcinoma. The etiopathogenesis of PSC is unknown, but the frequent association with inflammatory bowel disease, in 62–83% of PSC patients, and increased intestinal permeability in PSC has suggested a role for microbiota or microbial metabolites or derivatives, e.g. pathogen-associated molecular patterns, PAMPs) such as lipopolysaccharide (LPS), lipoteichoic acid, and peptidoglycan in the etiopathogenesis of the disease. It has been proposed that the association between PSC and IBD can be due to increased enterohepatic circulation of PAMPs (“leaking gut”), or abnormal PAMPs (as a result of enteric microbial dysbiosis, described in IBD).The samples were collecting during ERCP examinations. Before injecting contrast media a bile sample was aspirated from extrahepatic bile ducts using balloon catheter. Brush cytology was routinely performed during ERC. ERC findings were scored according to the modified Amsterdam score (mAm score). Isolation, amplification and sequencing of the V1-V3 regions of bacterial 16S rRNA gene were performed on the Illumina MiSeq platform.
data type Other
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publication
Bile microbiota in primary sclerosing cholangitis: Impact on disease progression and development of biliary dysplasia.
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dbXrefs
sra-run  ERR1719715ERR1719716ERR1719717ERR1719718ERR1719719ERR1719720ERR1719721ERR1719722ERR1719723ERR1719724 More
sra-submission  ERA745451
biosample  SAMEA4534379SAMEA4534380SAMEA4534381SAMEA4534382SAMEA4534383SAMEA4534384SAMEA4534385SAMEA4534386SAMEA4534387SAMEA4534388 More
sra-study  ERP017267
sra-sample  ERS1433558ERS1433559ERS1433560ERS1433561ERS1433562ERS1433563ERS1433564ERS1433565ERS1433566ERS1433567 More
sra-experiment  ERX1789904ERX1789905ERX1789906ERX1789907ERX1789908ERX1789909ERX1789910ERX1789911ERX1789912ERX1789913 More
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status public
visibility unrestricted-access
dateCreated 2017-08-18T00:00:00Z
dateModified 2017-08-18T00:00:00Z
datePublished