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identifier PRJEB2019
type bioproject
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organism
title The Genome-Wide Dynamics of the Binding of Ldb1 Complexes during Erythroid Differentiation.
description One of the complexes formed by the hematopoietic transcription factor Gata1 is a complex with the Ldb1 and Tal1 proteins. It is known to be important for the development and differentiation of the erythroid cell lineage and is thought to be implicated in long-range interactions. Here we studied the dynamics of the composition of the complex, in particular the binding of the negative regulators Eto2 and Mtgr1, in the context of their genome wide targets. The results shows that the complex acts almost exclusively as an activator, binding a very specific combination of sequences, with a positioning relative to transcription start site depending on the type of the core promoter. The activation is accompanied by net decrease in the relative binding of Eto2 and Mtgr1. A 3C/seq assay shows that the binding of the Ldb1 complex marks genomic interaction sites. This establishes the Ldb1 complex as a positive regulator of the final steps of erythroid differentiation that acts through the shedding of negative regulators and the active interaction between regulatory sequences.
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publication
The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation.
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dbXrefs
sra-run  ERR007420ERR007421ERR007422ERR007423ERR007424ERR007425ERR007426ERR007427ERR007428ERR007429 More
sra-submission  ERA000161
biosample  SAMEA957382SAMEA957384SAMEA957380SAMEA957383SAMEA957378SAMEA957379SAMEA957385SAMEA957377SAMEA957386SAMEA957381
sra-study  ERP000073
sra-sample  ERS001318ERS001317ERS001320ERS001319ERS001322ERS001321ERS001324ERS001323ERS001326ERS001325
sra-experiment  ERX002126ERX002127ERX002124ERX002125ERX002130ERX002131ERX002128ERX002129ERX002134ERX002135 More
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status public
visibility unrestricted-access
dateCreated 2010-05-28T00:00:00Z
dateModified 2010-05-28T00:00:00Z
datePublished 2010-05-28T00:00:00Z