home > bioproject > PRJEB2190
identifier PRJEB2190
type bioproject
sameAs
organism
title Streptococcus pneumoniae evolution
description Antimicrobial resistance among pneumococci has greatly increased over the past two to three decades. Resistance to tetracycline (tet(M)), chloramphenicol (cat) and macrolides (erm(B) and/or mef(A/E)) is generally conferred by acquisition of specific genes that are associated with mobile genetic elements, including those of the Tn916 and Tn5252 families. The first tetracycline-, chloramphenicol- and macrolide-resistant pneumococci were detected between 1962 and 1970; however, until now the oldest pneumococcus shown to harbour Tn916 and/or Tn5252 was isolated in 1974. In this study the genomes of 38 pneumococci isolated prior to 1974 were probed for the presence of tet(M), cat, erm(B), mef(A/E) and int (integrase) to indicate the presence of Tn916/Tn5252-like elements. Two Tn916-like, tet(M)-containing, elements were identified among pneumococci dated 1967 and 1968. The former element was highly similar to that of the PMEN1 multidrug-resistant, globally-distributed pneumococcal reference strain, which was isolated in 1984. The latter element was associated with a streptococcal phage. A third, novel genetic element, designated ICESpPN1, was identified in the genome of an isolate dated 1972. ICESpPN1 contained a region of similarity to Tn5252, a region of similarity to a pneumococcal pathogenicity island and novel lantibiotic synthesis/export-associated genes.For further information on this study please see http://www.sanger.ac.uk/resources/downloads/bacteria/streptococcus-pneumoniae.html This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/
data type Genome sequencing and assembly
organization
publication
Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974.
properties 
{...}
dbXrefs
sra-run  ERR025253ERR025254ERR025255ERR025256ERR025257ERR025258ERR025259ERR025260ERR025261ERR025262 More
sra-submission  ERA015886ERA015898ERA015950ERA015975ERA020632ERA153428
biosample  SAMEA1483781SAMEA770011SAMEA770015SAMEA769959SAMEA770001SAMEA770020SAMEA770048SAMEA1483777SAMEA770021SAMEA770064 More
sra-study  ERP000245
sra-sample  SRS024887ERS011452ERS011461ERS011462ERS011463ERS011453ERS011454ERS011455ERS011456ERS011457 More
sra-experiment  ERX009744ERX2007456ERX2007465ERX2007466ERX2007467ERX2007457ERX2007458ERX2007459ERX2007460ERX2007461 More
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status public
visibility unrestricted-access
dateCreated 2011-01-17T00:00:00Z
dateModified 2011-01-17T00:00:00Z
datePublished 2011-01-17T00:00:00Z