home > bioproject > PRJEB2243
identifier PRJEB2243
type bioproject
sameAs
organism
title Whole genome sequencing of Plasmodium cynomolgi M strain (isolate)
description Plasmodium cynomolgi is a non-human primate malaria parasite that is very closely related to the human malaria P. vivax. The parasite infects a large range of Old and New World monkeys and also humans. One of its natural hosts is the rhesus monkey. Because of its proximity to P. vivax, with highly similar biology in all life cycle stages, P. cynomolgi infections in rhesus monkeys are frequently used as excellent model for P. vivax. The M strain of P. cynomolgi has been used extensively for studying parasite biology as well as for in vivo drug studies (Kocken et al., 2009, Antimicrob. Agents Chemother). Attempts to adapt this strain to in vitro culture have not been successful. In vivo transfection has been shown to be achievable with this strain (Kocken et al., 1999, Exp. Parasitol.). More recently, this strain is being used to develop more robust transfection technology as well as in vitro cultures of liver stages. We will be obtaining high coverage of Illumina reads (PCR-free where possible) with variable insert lengths and then assemble the genome de novo.. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/
data type Genome sequencing and assembly
organization
publication
properties 
{...}
dbXrefs
sra-run  ERR019324ERR019325ERR019326ERR019327ERR019328ERR035469ERR866434ERR871706ERR871707ERR871708 More
sra-submission  ERA013591ERA033219ERA434006ERA435000ERA436698ERA439999
biosample  SAMEA695046SAMEA695047SAMEA3176195
sra-study  ERP000298
sra-sample  ERS001838ERS023609ERS629143
sra-experiment  ERX007821ERX007819ERX007818ERX007820ERX007817ERX013469ERX946062ERX951307ERX951308ERX951309 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2010-08-18T01:00:00Z
dateModified 2010-08-18T01:00:00Z
datePublished 2010-08-18T01:00:00Z