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identifier PRJEB24962
type bioproject
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title Ancient DNA provides a snapshot of the domestication history of Sorghum bicolor within a temporal series from a single archaeological site. We find a combination of diverse selection pressures and local adaptation result in decreasing diversity and increasing mutation load.
description The evolution of domesticated cereals was a protracted, complex process with shifting selection pressures and repeated introgressions as plants and society co-evolved. We show a temporal series of archaeogenomes from a single archaeological site that reveals the evolutionary trajectory of sorghum under domestication. Contrary to expectations we find no evidence for a domestication bottleneck but a steady decline in diversity over time coupled with an accumulating mutation load. Dynamic selection pressures acted sequentially on architectural and nutritional domestication traits, and local adaptation including in phytochrome A metabolism. Durra type sorghum adaptively introgressed into the local population assuming environmental and donating domestication traits. These results reveal a model of domestication in which genomic adaptation and deterioration is a uniformitarian process unrestricted to the distant past.
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dbXrefs
sra-run  ERR2304356ERR2304357ERR2304358ERR2304359ERR2304360ERR2304361ERR2304362ERR2304363ERR2304412ERR2304413 More
sra-submission  ERA1210145ERA1210146ERA1210147ERA1210148ERA1210149ERA1210150ERA1210151ERA1210152ERA1210163ERA1210164 More
biosample  SAMEA104592361SAMEA104592362SAMEA104592363SAMEA104592364SAMEA104592365SAMEA104592366SAMEA104592367SAMEA104592368SAMEA104592418SAMEA104592419 More
sra-study  ERP106829
sra-sample  ERS2203643ERS2203644ERS2203645ERS2203646ERS2203647ERS2203648ERS2203649ERS2203650ERS2203700ERS2203701 More
sra-experiment  ERX2355684ERX2355685ERX2355686ERX2355687ERX2355688ERX2355689ERX2355690ERX2355691ERX2355740ERX2355741 More
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status public
visibility unrestricted-access
dateCreated 2018-05-21T00:00:00Z
dateModified 2018-05-21T00:00:00Z
datePublished