home > bioproject > PRJEB2581
identifier PRJEB2581
type bioproject
sameAs
organism
title Global phylogeny of enterotoxigenic Escherichia coli collection
description Enterotoxigenic Escherichia coli (ETEC), a major cause of infectious diarrhea, produce heat-stable and/or heat-labile enterotoxins and at least 25 different colonization factors that target the intestinal mucosa. The genes encoding the enterotoxins and most of the colonization factors are located on plasmids found across diverse E. coli serogroups. Whole-genome sequencing of a representative collection of ETEC isolated between 1980 and 2011 identified globally distributed lineages characterized by distinct colonization factor and enterotoxin profiles. Contrary to current notions, these relatively recently emerged lineages might harbor chromosome and plasmid combinations that optimize fitness and transmissibility. These data have implications for understanding, tracking and possibly preventing ETEC disease.http://www.sanger.ac.uk/resources/downloads/bacteria/escherichia-coli.html
data type Genome sequencing and assembly
organization
publication
Allele variants of enterotoxigenic Escherichia coli heat-labile toxin are globally transmitted and associated with colonization factors.
Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution.
properties 
{...}
dbXrefs
sra-run  ERR049156ERR049157ERR049158ERR049159ERR049160ERR049161ERR049162ERR049163ERR049164ERR049165 More
sra-submission  ERA063581ERA065600ERA067563ERA087394ERA088376ERA121031ERA123490ERA285988ERA410945ERA411692 More
biosample  SAMEA1031202SAMEA1031234SAMEA1031334SAMEA1031302SAMEA1031313SAMEA1031327SAMEA1031270SAMN14229125SAMEA1031305SAMEA1031217 More
sra-study  ERP000733
sra-sample  ERS038927ERS038928ERS038929ERS038930ERS038931ERS038932ERS038933ERS038934ERS038935ERS038936 More
sra-experiment  ERX026223ERX026224ERX026225ERX026226ERX026227ERX026228ERX026229ERX026230ERX026231ERX026232 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2011-10-18T01:00:00Z
dateModified 2011-10-18T01:00:00Z
datePublished 2011-10-18T01:00:00Z