home > bioproject > PRJEB2605
identifier PRJEB2605
type bioproject
sameAs
organism
title GENCODE PCR-Seq Batch IV
description As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch IV, based on chromosome 3, 4 and 5 annotations from Gencode 4 (January 2010). The sequences in this submission were obtained from two different RNA amplifications of the same original RNA for each tissue (called "cdna1" and "cdna2" in the assay names). In addition testis cDNA1 and lung cDNA2 were sequenced twice ("rep1", "rep2"), and sequences originated from a new dilution of brain and testis cDNA1 ("newdil") have also been included.
data type Transcriptome or Gene expression
organization
publication
GENCODE: producing a reference annotation for ENCODE.
properties 
{...}
dbXrefs
sra-run  ERR038478ERR038479ERR038480ERR038481ERR038482ERR038483ERR038484ERR038485ERR038486ERR038487 More
sra-submission  ERA038178
biosample  SAMEA1031826SAMEA1031825SAMEA1031821SAMEA1031824SAMEA1031827SAMEA1031823SAMEA1031822SAMEA1031828
sra-study  ERP000774
sra-sample  ERS016676ERS016679ERS016674ERS016673ERS016675ERS016677ERS016672ERS016678
sra-experiment  ERX015677ERX015687ERX015686ERX015685ERX015679ERX015678ERX015689ERX015675ERX015693ERX015676 More
distribution JSONJSON-LD
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bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2011-08-22T00:00:00Z
dateModified 2011-08-22T00:00:00Z
datePublished 2011-08-22T00:00:00Z