home > bioproject > PRJEB31266
identifier PRJEB31266
type bioproject
sameAs
organism
title Metagenomic sequencing of the rumen of 240 cattle from Scotland
description Ruminants provide essential nutrition for billions of people worldwide. The rumen is a specialised stomach adapted to the breakdown of plant-derived complex polysaccharides, and collectively the rumen microbiota encode the thousands of enzymes responsible. Here we present a comprehensive analysis of over 6.5 terabytes of Illumina and Nanopore sequence data, including assembly of 4941 metagenome-assembled genomes, and several single-contig, whole-chromosome assemblies of novel rumen bacteria. We also present the largest dataset of predicted proteins from the rumen, and provide rich annotation against public datasets. Together these data will form an essential part of future studies of rumen microbiome structure and function.
data type Genome sequencing and assembly
organization
publication
properties 
{...}
dbXrefs
sra-run  ERR3201375ERR3201376ERR3201377ERR3201378ERR3201379ERR3201380ERR3201381ERR3201382ERR3201383ERR3201384 More
sra-submission  ERA1756757ERA1761269ERA1768932ERA1772030ERA1825625ERA2768774ERA2819867
biosample  SAMEA6148346SAMEA6148171SAMEA6148198SAMEA6148414SAMEA6148357SAMEA6148252SAMEA6148207SAMEA6148282SAMEA6148193SAMEA6148317 More
sra-study  ERP113798
sra-sample  ERS3190353ERS3190354ERS3190355ERS3190356ERS3190357ERS3190358ERS3190359ERS3190360ERS3190361ERS3190362 More
sra-experiment  ERX3228993ERX3228994ERX3228995ERX3228996ERX3228997ERX3228998ERX3228999ERX3229000ERX3229001ERX3229002 More
distribution JSONJSON-LD
Download
bioproject.xml  HTTPS FTP
status public
visibility unrestricted-access
dateCreated 2019-02-15T00:00:00Z
dateModified 2019-02-15T00:00:00Z
datePublished