home > bioproject > PRJEB31663
identifier PRJEB31663
type bioproject
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title RNA-seq of Smarca5-deficient CD4/CD8 double-positive thymocytes isolated from 6-week mouse thymi and their comparison with wild-type and TP53-null controls.
description Here we utilized a conditional knock-out mouse model to investigate the role of Smarca5, an ISWI subfamily chromatin remodeling ATPase, during thymocyte development using hCD2-iCre transgene. We did transcriptional profiling of FACS-sorted CD4/CD8 double-positive thymocytes as this thymic population was persistent yet strongly underrepresented in adult 6-week mutant thymi. Controls included age-matched CD4/CD8 double-positive thymocytes from wild-type and tumor suppressor protein Trp53-null mice. For comparison, the Smarca5/Trp53-double-deficient thymocytes included in the experiment were partially rescued upon loss of Trp53.
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dbXrefs
sra-run  ERR3218394ERR3218395ERR3218396ERR3218397ERR3218398ERR3218399ERR3218400ERR3218401ERR3218402ERR3218403 More
sra-submission  ERA1762823
biosample  SAMEA5417288SAMEA5417289SAMEA5417290SAMEA5417291SAMEA5417292SAMEA5417293SAMEA5417294SAMEA5417295SAMEA5417296SAMEA5417297 More
sra-study  ERP114245
sra-sample  ERS3222586ERS3222587ERS3222588ERS3222589ERS3222590ERS3222591ERS3222592ERS3222593ERS3222594ERS3222595 More
sra-experiment  ERX3245921ERX3245922ERX3245923ERX3245924ERX3245925ERX3245926ERX3245927ERX3245928ERX3245929ERX3245930 More
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status public
visibility unrestricted-access
dateCreated 2019-04-02T00:00:00Z
dateModified 2019-04-02T00:00:00Z
datePublished