home > bioproject > PRJEB31678
identifier PRJEB31678
type bioproject
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organism
title Inter- and intra-lineage genetic diversity of wild-type Zika viruses reveals both common and distinctive nucleotide variants and clusters of genomic diversity
description ZIKV strains belong to three phylogenetic lineages: East African, West African, and Asian/American. RNA virus genomes exist as populations of genetically-related sequences whose heterogeneity may impact viral fitness, evolution, and virulence. The genetic diversity of representative ZIKVs (N=7) from each lineage was examined using next generation sequencing (NGS) paired with downstream Shannon entropy calculation and single nucleotide variant (SNV) analysis. This comprehensive analysis of ZIKV genetic diversity provides insight into the genetic diversity of ZKIV and repository of SNV positions across lineages.
data type Other
organization
publication
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{...}
dbXrefs
sra-run  ERR3218773ERR3218774ERR3218775ERR3218776ERR3218777ERR3218778ERR3218779ERR3218780ERR3218781ERR3218782 More
sra-submission  ERA1765592
biosample  SAMEA5418181SAMEA5418182SAMEA5418183SAMEA5418184SAMEA5418185SAMEA5418186SAMEA5418187SAMEA5418188SAMEA5418189SAMEA5418190 More
sra-study  ERP114261
sra-sample  ERS3223478ERS3223479ERS3223480ERS3223481ERS3223482ERS3223483ERS3223484ERS3223485ERS3223486ERS3223487 More
sra-experiment  ERX3246259ERX3246260ERX3246261ERX3246262ERX3246263ERX3246264ERX3246265ERX3246266ERX3246267ERX3246268 More
distribution JSONJSON-LD
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status public
visibility unrestricted-access
dateCreated 2019-07-31T00:00:00Z
dateModified 2019-07-31T00:00:00Z
datePublished