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identifier PRJEB31712
type bioproject
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title Epigenomic analysis of KLF1 haploinsufficiency in primary human erythroblasts
description Haploinsufficiency for the erythroid-specific transcription factor KLF1 is associated with hereditary persistence of fetal hemoglobin (HPFH). Increased HbF ameliorates the symptoms of -hemoglobinopathies and downregulation of KLF1 activity has been proposed as a potential therapeutic strategy. However, the feasibility of this approach has been challenged by the observation that KLF1 haploinsufficient individuals with the same KLF1 variant, within the same family, display a wide range of HbF levels. This phenotypic variability is not readily explained by co-inheritance of known HbF-modulating variants in the HBB, HBS1L-MYB and/or BCL11A loci. We studied Maltese individuals in which KLF1 p.K288X carriers display HbF levels ranging between 1.6-12.5% of total Hb. Using a combination of gene expression analysis, chromatin accessibility assays and promoter activity tests we find that allelic variation of wildtype KLF1 may explain a significant part of the variability in HbF levels observed in KLF1 p.K288X carriers. Our results have general bearing on the variable penetrance of haploinsufficiency phenotypes and on conflicting interpretations of pathogenicity of variants in other transcriptional regulators such as EP300, GATA2 and RUNX1.
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Epigenomic analysis of KLF1 haploinsufficiency in primary human erythroblasts.
properties 
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dbXrefs
sra-run  ERR3223998ERR3223999ERR3224000ERR3224001ERR3224002ERR3224003ERR3224004ERR3224005ERR3224006ERR3224007 More
sra-submission  ERA1770899ERA1771860
biosample  SAMEA5423259SAMEA5423260SAMEA5423261SAMEA5423262SAMEA5423263SAMEA5423264SAMEA5423265SAMEA5423266SAMEA5423267SAMEA5423268 More
sra-study  ERP114300
sra-sample  ERS3228549ERS3228550ERS3228551ERS3228552ERS3228553ERS3228554ERS3228555ERS3228556ERS3228557ERS3228558 More
sra-experiment  ERX3251454ERX3251455ERX3251456ERX3251457ERX3251458ERX3251459ERX3251460ERX3251461ERX3251462ERX3251463 More
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status public
visibility unrestricted-access
dateCreated 2020-01-08T00:00:00Z
dateModified 2020-01-08T00:00:00Z
datePublished