home > bioproject > PRJEB31852
identifier PRJEB31852
type bioproject
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title Effect of temperature in the genome and transcriptome of L. braziliensis promastigotes
description The leishmaniases are complex neglected diseases caused by protozoan parasites of the genus Leishmania. Cutaneous leishmaniasis is the most common clinical manifestation around the world and in the New World the main etiological agent is Leishmania braziliensis. In recent studies, chromosome and gene copy number variations (CNVs) as well as transcriptomic changes have been highlighted as some mechanisms used by Leishmania species to adapt to environmental changes. However, no studies have described the impact of temperature shifts across the genome and transcriptome of Leishmania promastigotes. For these reasons the aim of this study is determine the effect of short-term temperature shifts in L. braziliensis promastigotes in vitro. Growth curves and genome and transcriptome sequencing (DNA-Seq and RNA-Seq) of L. braziliensis promastigotes were done from cultures subjected to three different temperatures, 24, 28, and 30°C; then, the resulting sequences were compared with the results obtained at the control temperature (26°C). Our results showed that the temperature shifts impacted the L. braziliensis proliferation, especially, at 30°C. Also, we did not find changes in the somy, SNPs and indels on the DNA among the three temperatures and only around 3% of the genes had significant copy number variations (CNVs) at each temperature, however, there was not a correlation between these genes variations and their transcripts. On the other hand, the transcriptome profiles demonstrated a fast response to the heat stress, in which the most relevant genes encode to amastin surface-like proteins, heat shock proteins (HSPs) and transport proteins which could be related with a direct response to this abiotic factor. This study provides evidence that L. braziliensis promastigotes exhibit a short-term response to heat stress, generating changes at gene CNVs and an up- or downregulation of a range of genes associated with different stimulus and other fundamental processes which might be important in their adaptation and their surviving to a temperature shift. These results gave us a first view of Leishmania genomic and transcriptomic short time adaptative capacity to temperature stress conditions, increasing the awareness of the biology of this important parasite in New World.
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dbXrefs
sra-run  ERR3418473ERR3418474ERR3418475ERR3418560ERR3418561ERR3418562ERR3418563ERR3418564ERR3418565ERR3418566 More
sra-submission  ERA2032609ERA2032650ERA2034897ERA2409666
biosample  SAMEA5761113SAMEA5761114SAMEA5761115SAMEA5761162SAMEA5761163SAMEA5761164SAMEA5761165SAMEA5761166SAMEA5761167SAMEA5761169 More
sra-study  ERP114463
sra-sample  ERS3564561ERS3564562ERS3564563ERS3564610ERS3564611ERS3564612ERS3564613ERS3564614ERS3564615ERS3564616 More
sra-experiment  ERX3441911ERX3441912ERX3441913ERX3441998ERX3441999ERX3442000ERX3442001ERX3442002ERX3442003ERX3442004 More
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visibility unrestricted-access
dateCreated 2019-05-26T00:00:00Z
dateModified 2019-05-26T00:00:00Z
datePublished